Tutorial notebooks

The notebook tutorials below are grouped by dataset and analysis workflow.

• Human aging DLPFC
  • Excitatory Neuron Gene Programs in the Aging Human Brain
  • Oligodendrocyte Gene Programs in the Aging Human Brain
• Mouse aging brain
  • MouseBrain Microglia stGP Tutorial
  • MouseBrain Downstream Tutorial
  • Downstream clustering and trajectory inference for stGP Microglia
• Mouse injured kidney
  • Injured PT stGP analysis: left kidney
  • Injured PT stGP analysis: right kidney
  • Immune cell stGP analysis: left kidney
  • Immune cell stGP analysis: right kidney
  • Day 2 Inj-PT spatial fate analysis: left kidney
  • Day 2 Inj-PT spatial fate analysis: right kidney