Tutorial notebooks

The notebook tutorials below are grouped by dataset and analysis workflow.

• Human aging DLPFC
  • Benchmarking stGP using Excitatory Neuron in Human Aging Brains
  • Validating stGP with NicheScope to Find Aging Effect of Niches in Oligodendrocytes
• Mouse aging brain
  • Mouse brain microglia stGP tutorial
  • Proximity effects and GO enrichment analysis in mouse brain microglia
  • Downstream clustering and trajectory inference for stGP Microglia
• Mouse injured kidney
  • Injured PT stGP analysis: left kidney
  • Injured PT stGP analysis: right kidney
  • Immune stGP analysis: left kidney
  • Immune stGP analysis: right kidney
  • Day 2 Inj-PT spatial fate analysis: left kidney
  • Day 2 Inj-PT spatial fate analysis: right kidney